国立遺伝学研究所 ゲノム多様性研究室
PUBLICATIONS
赤字は当研究室メンバーが主著者か責任著者の論文
2024
22. Warashina T, Sato A, Hinai H, Shaikhutdinov N, Shagimardanova E, Mori H, Tamaki S, Saito M, Sanada Y, Sasaki Y, Shimada K, Dotsuta Y, Kitagaki T, Maruyama S, Gusev O, Narumi I, Kurokawa K, Morita T, Ebisuzaki T, Nishimura A, Koma Y, Kanai A. (2024) Microbiome analysis of the restricted bacteria in radioactive element-containing water at the Fukushima Daiichi Nuclear Power Station. Appl Environ Microbiol. in press. pubmed.
2023
21. Ohkawara B, Kurokawa M, Kanai A, Imamura K, Chen G, Zhang R, Masuda A, Higashi K, Mori H, Suzuki Y, Kurokawa K, Ohno K. Transcriptome profile of subsynaptic myonuclei at the neuromuscular junction in embryogenesis. J Neurochem. in press. pubmed
20. Kurokawa M, Higashi K, Yoshida K, Sato T, Maruyama S, Mori H, Kurokawa K. (2023) Metagenomic Thermometer. DNA Res. 30(6):dsad024. pubmed
19. Mori H, Kato T, Ozawa H, Sakamoto M, Murakami T, Taylor TD, Toyoda A, Ohkuma M, Kurokawa K, Ohno H. (2023) Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community. DNA Res. 30(3):dsad010. pubmed プレスリリース
18. Idola D, Mori H, Nagata Y, Nonaka L, Yano H. (2023) Host range of strand-biased circularizing integrative elements: a new class of mobile DNA elements nesting in Gammaproteobacteria. Mob DNA. 14(1):7. pubmed
17. Toyoda A, Shibata Y, Matsuo Y, Terada K, Sugimoto H, Higashi K, Mori H, Ikeuchi A, Ito M, Kurokawa K, Katahira S. (2023) Diversity and compositional differences of the airborne microbiome in a biophilic indoor environment. Sci Rep. 13(1):8179. pubmed
16. Onuma T, Yamauchi T, Kosakamoto H, Kadoguchi H, Kuraishi T, Murakami T, Mori H, Miura M, Obata F. (2023) Recognition of commensal bacterial peptidoglycans defines Drosophila gut homeostasis and lifespan. PLoS Genet. 19(4):e1010709. pubmed
15. Segawa T, Yonezawa T, Matsuzaki R, Mori H, Akiyoshi A, Navarro F, Fujita K, Aizen VB, Li Z, Mano S, Takeuchi N. (2023) Evolution of snow algae, from cosmopolitans to endemics, revealed by DNA analysis of ancient ice. ISME J. 17(4):491-501. pubmed
2022
14. Morinaga K, Kusada H, Sakamoto S, Murakami T, Toyoda A, Mori H, Meng XY, Takashino M, Murotomi K, Tamaki H. (2022) Granulimonas faecalis gen. nov., sp. nov., and Leptogranulimonas caecicola gen. nov., sp. nov., novel lactate-producing Atopobiaceae bacteria isolated from mouse intestines, and an emended description of the family Atopobiaceae. Int J Syst Evol Microbiol. 72(10) doi: 10.1099/ijsem.0.005596. pubmed
13. Nobu MK, Nakai R, Tamazawa S, Mori H, Toyoda A, Ijiri A, Suzuki S, Kurokawa K, Kamagata Y, Tamaki H. Unique H2-utilizing lithotrophy in serpentinite-hosted systems. ISME J. 17(1):95-104. pubmed
12. Yakabe K, Higashi S, Akiyama M, Mori H, Murakami T, Toyoda A, Sugiyama Y, Kishino S, Okano K, Hirayama A, Gotoh A, Li S, Mori T, Katayama T, Ogawa J, Fukuda S, Hase K, Kim YG. (2022) Dietary-protein sources modulate host susceptibility to Clostridioides difficile infection through the gut microbiota. Cell Rep. 40(11):111332. pubmed
11. Murakami T, Takeuchi N, Mori H, Hirose Y, Edwards A, Irvine-Fynn T, Li Z, Ishii S, Segawa T. (2022) Metagenomics reveals global-scale contrasts in nitrogen cycling and cyanobacterial light-harvesting mechanisms in glacier cryoconite. Microbiome. 10(1):50. pubmed プレスリリース
10. Tanaka Y, Yamashita R, Kawashima J, Mori H, Kurokawa K, Fukuda S, Gotoh Y, Nakamura K, Hayashi T, Kasahara Y, Sato Y, Fukudo S. (2022) Omics profiles of fecal and oral microbiota change in irritable bowel syndrome patients with diarrhea and symptom exacerbation. J Gastroenterol. 57(10):748-760. pubmed
9. Segawa T, Yonezawa T, Mori H, Kohno A, Kudo Y, Akiyoshi A, Wu J, Tokanai F, Sakamoto M, Kohno N, Nishihara H. (2022) Paleogenomics reveals independent and hybrid origins of two morphologically distinct wolf lineages endemic to Japan. Curr Biol. 32(11):2494-2504.e5. pubmed プレスリリース
8. Yukawa-Muto Y, Kamiya T, Fujii H, Mori H, Toyoda A, Sato I, Konishi Y, Hirayama A, Hara E, Fukuda S, Kawada N, Ohtani N. (2022) Distinct responsiveness to rifaximin in patients with hepatic encephalopathy depends on functional gut microbial species. Hepatol Commun. 6(8):2090-2104. pubmed
7. Madigan MT, Absher JN, Mayers JE, Asao M, Jung DO, Bender KS, Kempher ML, Hayward MK, Sanguedolce SA, Brown AC, Takaichi S, Kurokawa K, Toyoda A, Mori H, Tsukatani Y, Wang-Otomo ZY, Ward DM, Sattley WM. (2022) Allochromatium tepidum, sp. nov., a hot spring species of purple sulfur bacteria. Arch Microbiol. 204(1):115. pubmed
2021
6. Sakamoto M, Ikeyama N, Yuki M, Murakami T, Mori H, Iino T, Ohkuma M. (2021) Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces. Int J Syst Evol Microbiol. 71(12), doi: 10.1099/ijsem.0.005121. pubmed
5. Mori H, Ishikawa H, Higashi K, Kato Y, Ebisuzaki T, Kurokawa K. (2021) PZLAST: an ultra-fast amino acid sequence similarity search server against public metagenomes. Bioinformatics. 37(21):3944–6. pubmed プレスリリース
4. Sugimoto R, Nishimura L, Nguyen PT, Ito J, Parrish NF, Mori H, Kurokawa K, Nakaoka H, Inoue I. (2021) Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more. PLoS Comput Biol. 17(10):e1009428. pubmed
3. Tsukuda N, Yahagi K, Hara T, Watanabe Y, Matsumoto H, Mori H, Higashi K, Tsuji H, Matsumoto S, Kurokawa K, Matsuki T. (2021) Key bacterial taxa and metabolic pathways affecting gut short-chain fatty acid profiles in early life. ISME J. 15(9):2574-2590. pubmed
2. Segawa T, Yonezawa T, Mori H, Akiyoshi A, Allentoft ME, Kohno A, Tokanai F, Willerslev E, Kohno N, Nishihara H. (2021) Ancient DNA reveals multiple origins and migration waves of extinct Japanese brown bear lineages. R Soc Open Sci. 8(8):210518. pubmed プレスリリース
1. Sakamoto M, Ikeyama N, Toyoda A, Murakami T, Mori H, Morohoshi S, Kunihiro T, Iino T, Ohkuma M. (2021) Coprobacter secundus subsp. similis subsp. nov. and Solibaculum mannosilyticum gen. nov., sp. nov., isolated from human feces. Microbiol Immunol. 65(6):245-256. pubmed